A NOVEL APPROACH TO EVALUATE HABITAT QUALITY IN THE UPPER MISSISSIPPI RIVER -- QUANTITATIVE ANALYSIS OF ESSENTIAL FATTY ACIDS Michelle Bartsch, Lynn Bartsch, Brent Knights, Jon Vallazza, Steve Gutreuter, William Richardson, and Teresa Newton U.S. Geological Survey, Upper Midwest Environmental Sciences Center, La Crosse, WI 54603. Quantitative analysis of fatty acids (FAs) has emerged as a powerful tool to determine food sources and quality in aquatic food webs. Polyunsaturated fatty acids (PUFAs), which includes omega-3 and omega-6 FA, are almost exclusively synthesized by vascular plants and algae, yet play an important role in cellular function and hormone metabolism of animals. PUFAs that cannot be biosynthesized de novo, such as alpha-linolenic acid and linoleic acid, or in sufficient quantities to ensure optimal physiological performance, such as eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), are called essential fatty acids (EFAs). EPA and DHA have been shown to regulate aspects of growth, development, reproduction, or immunological response in marine mollusks and fish, and freshwater zooplankton. In addition to indicators of consumer health, FAs have been used as diet biomarkers to elucidate prey type and dietary importance for marine and freshwater fish, marine carnivores, and freshwater zooplankton. We have begun using FAs as potential indicators of food sources and habitat quality in Upper Mississippi River food webs. Preliminary data showed that concentrations of EFAs in consumers are higher in channel habitats than in backwaters. For example, concentrations of EPA and DHA were significantly higher in bluegill, unionid and zebra mussel tissues from channel habitats compared to backwaters. In contrast, concentrations of arachidonic acid (ARA, a known precursor of stress prostaglandins in fish and humans) were significantly higher in bluegill and zebra mussel tissue from backwaters compared to channel habitats. ARA concentrations were similar in unionid mussel tissue between habitats. Preliminary results suggested that channel habitats provided consumers with a better mix of EFAs than backwaters, implying that consumer health was better in channels than backwaters. We hypothesize that low EFA concentrations in backwaters may result from: 1) the long hydraulic retention times that inhibit replenishment of depleted EFA supplies; 2) lower production of EFA-rich phytoplankton; or 3) abundant populations of cyanobacteria (due to long retention times and late summer nitrogen depletion of backwaters). Future research will more explicitly examine the spatial and temporal patterns of EFAs in food webs in these habitats including relations between: 1) EFA concentrations in algal groups and consumers; 2) EFA concentrations and rates of secondary and tertiary production; and 3) nutrient concentrations, habitat connectivity, and food web production. Finally, these initial studies will identify baseline patterns of food web interactions and food sources against which the effects anthropogenic perturbations (e.g., invasive species, habitat restoration, and climate change) can be measured. Keywords: fatty acids, food webs, habitat quality, Mississippi River, channel and backwater